PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001229G0220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 277aa    MW: 29770.7 Da    PI: 7.9447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001229G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-17102152255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g  GVr+++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  PH01001229G0220 102 GLIGVRRRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAAMAYDQAAFSVRG 152
                      567******.**********32..2.24**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.997102160IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21102161IPR016177DNA-binding domain
PRINTSPR003678.4E-8103114IPR001471AP2/ERF domain
PfamPF008478.5E-13104152IPR001471AP2/ERF domain
CDDcd000187.81E-18105162No hitNo description
SMARTSM003808.2E-31105166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-28105160IPR001471AP2/ERF domain
PRINTSPR003678.4E-8126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQACYSSSS SSLLTTQQHH SYTTSTAMNL LLIPSVPPGA CHLDTTASSS LPLDTNEDDM  60
HILNTLLLEM DMEASSSSSS SSSTSSSPDQ PPKRRDHQPI KGLIGVRRRP WGKFAAEIRD  120
STRKGARVWL GTFDTPEAAA MAYDQAAFSV RGAAAVLNFP VDRVQESLRT LALAAAGGSP  180
VLALKRRHSI RKRSPSKKKT ISHKQQQLAA IKEPVPKPCP WPGVVELEDL GADYLEELLR  240
VSESEPVVVH GSSPPACNQL HRGGDLPSLL GCWLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-24105161561ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-23105161864ATERF1
3gcc_A1e-23105161864ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341744e-73BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds.
GenBankJX4699504e-73JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757985.13e-61PREDICTED: ethylene-responsive transcription factor ERF037-like
TrEMBLI1IT658e-63I1IT65_BRADI; Uncharacterized protein
STRINGBRADI4G38930.12e-62(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-47ethylene response factor 1